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A single-cell genomics pipeline for environmental microbial eukaryotes
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Missing microbial eukaryotes and misleading meta-omic conclusions
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Maast: genotyping thousands of microbial strains efficiently
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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How Filamentous Fungi Sense Food
Filamentous fungi are also being used in the biotechnology industry to produce enzymes, proteins, and other … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored … funds from the Fred E. Dickinson Chair of Wood Science and Technology to N.L.G.. V.W.W. was partially supported by …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the improvements it encompasses …
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Cultivating Symbiotic Antarctic Microbes
… cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and … , a team led by Rick Cavicchioli at the University of New South Wales along with researchers at the U.S. … directly involved in enabling the Nanohaloarchaeota to gain access to  Hrr. lacusprofundi host cells to obtain essential …
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Simon Roux
… tools to identify virus sequences, the design of new experimental approaches to link viruses to their … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology 37, 29–37. Berg et al., 2021. Host population …
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The Power of One, Amplified
… potentially of use in fields ranging from agriculture to biotechnology and medicine, the vast majority in, on, and … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, … another might exhibit few limitations to interactions and new connections, thus sharing more ideas, similar to the …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
… developed to meet the Nation's growing need for science and technology professionals with advanced computer skills. …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors … factors that initiate transcription in bacteria. Using this technology, which combines an in vitro transcription assay … factors is the most straightforward application of the technology, in principle, RIViT-seq can be applied to any …
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Genome-reconstruction for eukaryotes from complex natural microbial communities
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