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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Specific understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy and … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is … Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … Wint said. “Fungi play an important role in the earth’s ecosystem,” said Salamov, one of Wint’s mentors and …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … might compromise samples. In addition, high-throughput SIP places samples into standardized microwell plates, allowing … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … side of the road to collect small weedy plants and bring them back to the lab. The weedy grass was green millet … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … power could help usher widespread use of biofuel as a replacement to fossil fuel. … This work was supported by the …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … Ecology & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … abilities. This capacity to survive elevated temperatures that normally would kill the moss may hold clues … moss. Peat is found in the temperate north, in U.S.-based places like Minnesota for example, despite taking up only …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers … users can select to be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools … Prior to joining the JGI, he spent time as a faculty member at the University of Rhode Island, as a Senior …
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