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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … economically important because of their use in industrial materials, pharmaceutical products, and as biofuel … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently …
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Science Programs
… The JGI’s Science Programs offer support to users and their … their expertise to enhance the scientific impact of user projects, develop cutting-edge approaches for and with users, and create computational tools and resources for them. Their …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… is through a method called Multiple Displacement Amplification, and most genomes that were acquired through it were … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … more complete and evenly covered genomes when tested in human cells. To see if this method could also improve genome …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … Mitchell (Neochromosome) have worked to replace yeast’s native chromosomes with synthetic versions. This project has … the way. Eventually, the goal is to create an entirely human-generated yeast genome. …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … and importance in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … done by the Banfield lab in collaboration with the JGI), human microbiomes, natural oil seeps in Santa Barbara, …
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Better Genome Editing for Bioenergy
… is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … . JW acknowledges additional support from the National Science Foundation Graduate Research Fellowship …
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Examples: Successful LOIs & Submissions
… as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been … RNA-seq and metabolomic insights in lignin biosynthetic pathway edited populus …
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