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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly … bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature Microbiology an important … users will enable us to assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI …
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Cracking the Secrets of the Diatom’s Shell
Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila Mukhopadhyay and Steve Singer are harnessing the versatile bacterium …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together … Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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Back to the Future! A Sorghum Story
You might know sorghum as an edible grain. But there are some sorghum varieties, grown on marginal land with little water, which were developed specifically to … John Mullet, a biologist at Texas A&M University, tells us how sorghum’s historical — and literal — roots could play a …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In … depends on lakewater samples — so this episode is a look at how researchers get these specialized snapshots of a …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to … we also hoped to use this unique opportunity to quantify how transitions to higher ploidy could be generating these … also hoped that this would more broadly allow us to assess how ploidy variation alters genomic diversity, fitness, and …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the … project, I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within … wetlands.” A chapter of Rambo’s research focuses on how viruses influence carbon cycling in coastal mangroves. …
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JGIota: The Algae Nicknamed ‘Chlamy’
… single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it …
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Better Living Through Bioenergy
Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila Mukhopadhyay and Steve Singer are harnessing the versatile bacterium …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not … — skills that matter increasingly as the climate warms. However, these are complicated interactions to untangle. … of soil RNA — we can access — ‘What are they doing? How do they interact?’” said senior author Francis Martin, a …
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