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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. It must be a … in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding …
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SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … over 500,000 existing genomes available at that time. “Looking across the tree of life, it’s striking how many … dataset into KBase has immediate value because people can find the high-quality MAGs and use them to inform future …
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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … scales. “Cell-free systems have been really powerful at finding ways to accelerate bio-design and identifying the … the yeasts received fine-tuning of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their …
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Who We Are
… Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and part of the Biosciences Area. The …
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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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IMG Webinar Series
… Find a series of webinars related to our Integrated …
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Toward More Efficient Artificial Photosynthesis
… Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. … are the factories in plant cells. Using photosynthesis, they take raw materials including sunlight, carbon and … Genomics call, the JGI synthesized library of genes that code for Enoyl-CoA Carboxylase/Reductase (ECR) enzyme …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … these organisms use to bust biomass apart. She and her team find these fungi, and their enzymes, primarily in animal …
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