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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Pinpointing the processes happening on and in forest soil also better enriches models of global carbon and … ground and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from …
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Dispatches From JGI Interns
… real, impactful research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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How to Target a Microbial Needle within a Community Haystack
… and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … bacteria called “Vis6” that are found in North Sea algal blooms. The workflow starts by tagging specific cells using … of the sequences from a bulk metagenome, to just over 50 percent of the targeted metagenome sequence reads. This …
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland
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Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina)
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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