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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … from public repositories, as well as project data entered by external users. The Impact One of the significant … U.S. Department of Energy Joint Genome Institute …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE training grant.  Building off the previous year’s …
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All Events
… The JGI is represented at conferences year round; find out where …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users … to cutting-edge capabilities to help advance their science by generating data in three overarching categories: DNA … Deputy of Genomic Technologies …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … functional genome annotation, improves understanding of the role small molecules play in diverse biological …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 … relied on the E. grandis reference genome published in 2014 by a team led by University of Pretoria scientists with help …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … from the genome could help scale sustainable sugarcane conversion technologies for  biofuels and other bioproducts. … genome of R570 is available on the JGI plant data portal,  Phytozome .   …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … minimum set of ATs that act together to create the robust network to supply amino acids fast enough for life to grow,” … and eukaryotes having slightly larger numbers due to their expanded metabolisms. These ATs can operate in a relatively …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … species and sites, reflecting ecological patterns shaped by both local conditions and the movement of microbes … in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin Frank’s lab , …
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Jeremy Schmutz
… directed finishing and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the collaborative …
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Joe Ecker
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