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Microbiome engineering for sustainable agriculture: using synthetic biology to enhance nitrogen metabolism in plant-associated microbes
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Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis
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Triphenyltin degradation and proteomic response by an engineered Escherichia coli expressing cytochrome P450 enzyme
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… different ways of processing nitrogen. To boost crops more efficiently in the future, the evolutionary past may hold … loosely understood, leaving potential targets for crop engineering untouched. Research recently published in  The … as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley National …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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FICUS-NERSC/KBASE
… performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological … missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… consequences on the entire food web, and therefore ecosystem services that we all depend on,” said Mock. Mock and … phytoplankton communities.” A change in the base would reverberate throughout the food web, like taking a jackhammer … communities,” said Mock. The greenhouse gas carbon dioxide (CO2), produced from the burning of fossil fuels, is what’s …
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JGI User Executive Committee Expands
… how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … Research Center. Her research focus is genetically engineering the plant cell wall to address dairy … His lab is interested in how microbial communities can efficiently degrade complex polymers that are not easy to …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , … for collecting genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) … Gawad has been supported for this work by a Chan Zuckerberg Biohub Investigator Award, NIH Director’s New …
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DOE Metrics
… **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE Metrics There were 2,456 unique* … includes Principal Investigators (PIs), Co-PIs, and collaborators. *Unique users are counted once, even though an … to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of the sequencing …
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to allow …
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