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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI … IAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives for the …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting … discussions, workshops, and informal networking events. JGI will present both a genome center talk and a tech talk. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene … metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … acknowledge the significant efforts to collect and extract DNA from these samples, many of which come from unique, …
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Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental … down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other … samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so … by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and … communities. This involves both experimental and computational exploration of uncultivated viral diversity, …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the energy-producing … The next step applied metagenomic binning (grouping sequencing reads by their likely organism of origin) …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans … Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134T)
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