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…  under PNNL’s Soil Microbiome SFA, which aims for a systems-level understanding of the soil microbiome and its … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place … drought and multi-isotope labeling experiment, and the data will allow them to better understand the impacts of …

… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …

DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …

… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …

… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural … genome research and apply experimental and computation tools to solve research problems. In Visel’s group, Olmstead … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that …

… because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Morel Mushrooms on MycoCosm Data Portal …

… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …

Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New Phytologist , … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. …

… past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the … immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting iterative searches …

Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI). … it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A …