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Ancient Algae Reveal Secrets of Plant Evolution
… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … varieties able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass … (grant agreement no. 101001675). … Zygnema on PhycoCosm … Dataset …
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The Power of One, Amplified
… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … was identified from microbial and metagenome sequence data sets generated from a handful of hot springs, including …
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John Vogel
… a driving force behind the development of numerous genomic resources that fostered the widespread adoption of … research is focused on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation … epigenetic analysis techniques) and utilizing these resources to understand genome organization and regulation, …
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Training the Next Generation of Talent
… genome research and apply experimental and computation tools to solve research problems. In Visel’s group, Olmstead … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that … of the opportunity. “I’m getting a picture of the amount of data that’s going to be generated at academic level in a few …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … exploring how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform …
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … same route. “It was really amazing how the quality of the data improved thanks to that massive amount of new genomes,” …
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Extracting the Secrets of Secondary Metabolites
… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …
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A Collaboration to Improve Plant Genome Annotations Across Species
… to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … seven more groups joined the project to contribute to the data for six new species. I must mention that some of the …
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Nikos Kyrpides
… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. … BA in Biology, Aristotle University of Thessaloniki, …
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Anna Ratner
… is working on the display and visualization of large omics data. …
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Len Pennacchio
… the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA …
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