Search

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). Prospective users with questions … Wood-Charlson EM, et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Rev. …

… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each … proposals were accepted for 2024. Harnessing the JGI’s  resources, these researchers will dive into a range of …

… annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … new avenues for utilizing these organisms in sustainable practices, such as biofuel production and natural … Datasets …

… sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … Methylation detection currently only works using subread data, PacBio is working on support to use CCS data as input. Data analysis Q:  What types of analysis …

… learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …

… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint … discovery of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific …

… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the … by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …

… also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and … for providing input and advice on JGI policies and practices that affect users and their access to technical …

… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …