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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … illustrates how the research community brings together the data resources enabled by the DOE Biological and … Datasets …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering …
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Enlarging Windows into Understanding Gene Functions
… Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went on to … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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Improving the Cacao Genome and Phytozome
… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now … Theobroma cacao on Phytozome Data Portal …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… users with various outputs free of charge, including data such as fully annotated genome assemblies or … that the resulting work will be published. JGI data is subject to a brief embargo period, after which it …
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CSP Functional Genomics
… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Natural Prodcast Episode 7: Ben Shen
… first one, first that we call antibody drug conjugates, abbreviated as “ADC”, was approved in the year 2000, and … so everybody, readers of the library, can come to our databases and look for the specific information they are … the genomics, with the bioinformatics and with the bigger data, another area I see a great potential will be machine …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study … the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes …
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The fungus that made itself at home
… Serpula lacrymans on MycoCosm Data portal … Serpula humantioides on MycoCosm Data portal … Datasets … Datasets …
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Triggering Morel Fruiting
… Morel Mushrooms on MycoCosm Data Portal …
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iPHoP: A Matchmaker for Phages and their Hosts
… used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, …
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