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Applying Viral Genomics Expertise to Understanding the Human Virome
… global researchers on projects related to understanding how the interactions between viruses and their host microbes … latest strategic plan (download a copy  here ) describes how understanding these nutrient cycles can help researchers … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Ancient Algae Reveal Secrets of Plant Evolution
… , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene … existed in close algal relatives  to terrestrial plants showcases how early plants built upon an ancient genetic framework to … the Joint Genome Institute Community Science Program (CSP), the United States Department of Agriculture (USDA) …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … at  https://phytozome-next.jgi.doe.gov/jbrowse/index.html How can I access the genome data that was formerly at … of the InterMine data warehouse, is still available in v13. However, the genomes included in PhytoMine will typically …
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When “The Blob” Made It Hotter Under the Water
… in the ocean drive the biological pump that takes carbon from the atmosphere and keeps it in the deep ocean. … The Blob, researchers developed a preliminary model of how marine microbial communities are affected by warming … studies could help researchers improve predictive models on how climate change may impact marine microbes and by …
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JGI Workshop at 2025 Aquatic Sciences Meeting
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Cultivating Symbiotic Antarctic Microbes
… with the humans and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of … researchers have been able to gain further insights about how microbes have adapted to thrive in polar ecosystems. The … successfully cultured two strains of Nanohaloarchaeota and showed they required cell-cell contact with the Antarctic …
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Introducing New Members of the JGI User Executive Committee
… but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently … and can serve no more than two consecutive terms. In late 2021, the JGI launched a solicitation for nominations for … stages. The election period concluded on December 23, 2021. …
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SPRUCE-ing Up Science
… and Duke University, published their research related to how bacteria that colonize the roots of sphagnum work to … that normally would kill the moss may hold clues to how these carbon sink environments can continue to hold onto their …
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Marine Microbe Contains Multitudes
… abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 exist in so many varied environments? Now, a … of living. The Impact Microbes help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other …
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JGI@25: Studying Sorghum’s Survival Skills
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … which is the fastest way for plants to convert carbon dioxide and water into sugars and oxygen. Both sugarcane and corn share this photosynthetic pathway. However, neither crop shares sorghum’s hardiness, so …
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Pinning Down a Piece of Photosynthesis
… cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of … they turn carbon dioxide and water into oxygen and sugars. How photosynthesis works, though, is much harder to pin …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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