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Tracking the Origins of Methane-Producing Microbes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … most of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Corals in Hot Water Get Help From Their Microbes
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … April 2024 — through serving an increased number of users with a record output of products, making data easier to … number of primary users — 2,475 — had active proposals with us, along with more than 15,000 secondary users who …
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Party in the Rhizosphere
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Ben Bowen
… Arrayed Analysis Toolkit: analyzing spatially defined samples using mass spectrometry imaging. Analytical … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … 59(1), 33–42. Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. …
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Atif Shahab
… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables efficient analysis and … status. Mr. Shahab has extensive experience in Laboratory Information Management Systems (LIMS), bioinformatics, and …
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Decoding Yellowstone’s Microbial Mats
… Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have … This allows us to provide diverse scientific communities with large amounts of standardized high-quality data and …
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Science Programs
… The JGI’s Science Programs offer support to users and their … of user projects, develop cutting-edge approaches for and with users, and create computational tools and resources for … users are encouraged to reach out to program heads with questions on opportunities to partner with the JGI on …
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PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens
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Microbiome Data Science Team
… The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … of data science in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts … 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological applications (e.g., new …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of … their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, …
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