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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and … interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … tend to be dominated by prokaryotes (microorganisms without a defined nucleus). Colder waters nearer the poles, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer … Yoshikuni is the DNA Synthesis Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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DAP-seq Drives Robust Mapping of Gene Regulation
… limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … features prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, … that may be relevant to both algae and land plants.  Within the biogeochemistry group, one of the four proposals …
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Learning to Look
… distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … or phages called inoviruses, which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic …
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Fishing for Novel Cellulose Degraders
… of equipment for fly fishing is a boxful of lures. Designed with feathers or wires to mimic an insect or a particular … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Using a single-cell screen, they can now identify microbes with specific functional characteristics. When they tested …
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Open Frameworks Training the Next Generation of Scientists
… for both student and faculty researchers. Aligning with this overarching goal, Myco-Ed is a partnership … faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE … microbiome data. Undergraduate educators are partnering with the JGI and KBase to tap into their existing …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Tracing the Evolution of Shiitake Mushrooms
… sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … more genetic diversity in wild Lentinula species compared with farmed cultivars, highlighting a potential conservation … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … These resources would provide the research community with the ability to address questions such as sphagnum’s associations with methane oxidizing bacteria, nutrient uptake, and its …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working … on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular … building productive infrastructure in close collaboration with the local scientists. As the lead of the infrastructure …
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