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The Power of One, Amplified
… community was similar across sequencing approaches, that species specific sets of single cells harbored mobile … populations varied with respect to the amount of within species recombination, indicating variation in gene flow … profile. But each approach demonstrates its full value at different scales. Amplicon sequencing is commonly used to …
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Fungal Friends or Foes in Plant Roots
… a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. … Differentiating friends from foes in the fungal root …
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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JGI & KBase at PAG XXVII
… Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 PM Highlights from Genome of Miscanthus 7:45 …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… use for stream health, they look at how many invertebrate species are there.  ALISON:  Those invertebrate species include mayflies and the caddisflies, which are of … of species were the same, but what they’re eating was different, and what they’re eating are microbes.   And so …
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Picking Up Threads of Cotton Genomics
… remarkably high overall sequence similarity yet drastically different fiber morphology between domesticated ( Gossypium … ) and wild ( G. mustelinum, G. tomentosum, G. darwinii ) species. (Z. Jeffrey Chen, John T. Lovell and Avinash … traits in the domesticated  G. barbadense and  G. hirsutum species. Unique genes were also identified in the other …
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Understanding Wildfire Recovery, Starting in Soil
… harbored fungal genomes, including a novel Leotiomycetes species and Coniochaeata lignaria , and both DNA and RNA … forest within this timeframe, namely, ectomycorrhizal fungi species that can promote tree establishment and growth.  … , and provides a powerful snapshot of what soils across different burn severities look like a year after a fire. It …
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Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp. and Phlebia brevispora
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… factors and mechanics of gene expression in over 400 fungi species. “Fungi are the masters of adaptation,” Wint … explained. The fungal kingdom contains over one million different species and evidence of their ancestors can be found in …
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Niche differentiation is spatially and temporally regulated in the rhizosphere
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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