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Legacy Effects of Cropping System and Precipitation Influence the Core Camelina sativa Microbiome
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, … director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She …
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Fishing for Novel Cellulose Degraders
… typically found in low abundances. The Impact Microbes are known to be key contributors to the planet’s biogeochemical … cycles, but the vast majority remains uncultivated and unknown. The challenge remains to learn more about what … To validate the predicted cellulases from their captured genomes, the team then used DNA synthesis and cloning, …
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Annual Genomics of Energy & Environment Meeting
… basis to the worldwide scientific community can advance your research goals. Keynotes: M. Francesca Cotrufo, …
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Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
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Data Policy
… : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted to … in which data is publicly visible and available in JGI systems. Users not involved with the proposal under which … In past data policies, data were publicly visible in JGI systems only but use-restricted until publication by PIs or …
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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Busting the Unbreakable Lignin
… component for the plant, like the brick-and-mortar of a building or the human skeleton. It’s more complex, and poisons enzymes and the  microbes that make them. It’s known that aerobic fungi, like mushrooms, have some ability … Santa Barbara  recently published a paper in  Nature Microbiology offering irrefutable evidence that lignin can, in …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … them. Based on data reported in the April issue of Soil Biology and Biochemistry , the team found that fungi are … nitrogen and using it as an energy source. No fungi are known to be able to do this. JGI and EMSL’s contributions …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … pressure on retaining the flagellum in the terrestrial ecosystems. Unfortunately, neither paper was able to resolve … and that the first terrestrial fungi predate the oldest known fossil record of land plants and evolved in early …
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Integrating Experimentation with Data
… include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled laboratory automation, data … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at no cost. The …
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