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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … give researchers a way to access much more information about fungi in these environments. “Now with these new tools …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, …
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Taking Stock of the Known and Unknown Microbial Space
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global …
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A Complex Confection Decoded: Sugarcane Reference Genome
… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … for the sugarcane cultivar R570 has been generated and  reported in the journal  Nature . The work led by … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of … analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … ocean could fix less carbon when infected. Little is known about virus-infected microbial cells that are transformed … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary … their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times … in water, makes up the overwhelming majority of the ground cover in peatlands. These boggy ecosystems are acidic and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … CSP  New Investigator call for proposals.  Tips: Contact us with your questions (jgi[email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … the University of Konstanz and the University of Vienna  reported recovering draft metagenome-assembled genomes for …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and unknown. The challenge remains to learn more about what microbes are present in any given … spectrometry-based enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught …
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