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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … technologies and computational approaches, more and more virus sequences are being recovered and identified from … completeness and removal of contamination from the host organism. As reported in Nature Biotechnology , a team from …
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High‐density linkage map reveals QTL underlying growth traits in AP13×VS16 biparental population of switchgrass
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JGIota: Looking Back at Sequencing for Soybeans
… able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about that work from researchers Gary Stacey (University of …
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Marine Microbe Contains Multitudes
… different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. … the environment. Moreover, the deep ocean is the largest inorganic reservoir of carbon on earth; because SAR324 — one …
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SPRUCE-ing Up Science
… of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … places like Minnesota for example, despite taking up only about 3% of the planet’s landmass, peat moss and their … on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into the world of …
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Len Pennacchio
Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … Peltonen School of Human Genomics, Sanger Center 2011-  Co-Organizer “Systems Biology of Gene Regulation and Genome … in Genome Biology & Technology (AGBT)” … Education … About the Deputy of Genomic Technologies … Selected …
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Ray Turner Completes Last Tour of Lab Duty at JGI
JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For … is still good. “I noticed right away,” said Ellen Ford about Ray’s personal impact on her, “that you started … to be firm on the science requirements and when to be forgiving when need be in order to bring the project home, …
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Rex Malmstrom
… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … Boston University ( magna cum laude ) … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of … with DNA contained in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . …
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New Research Sheds Light on Diversity in the Deep Sea
… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too … sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. At these … be applied to biotechnology and medicine. A more robust understanding of these microbial communities could lead …
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Decoding Yellowstone’s Microbial Mats
… adopted new technologies, and made a few discoveries about the microbial mat denizens.  …
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JGI & KBase at PAG XXVII
… by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to … with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics … Genomics Building (IGB). Click here to learn more about this move. …
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