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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held … a National Science Foundation Graduate Research Fellowship Program under Grant No. 1650114, a UCSB Graduate Division …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… which microbes are present in a sample, to generate data about which organisms are active, and which microbes are … microbial ecosystems. These communities harbor tens of thousands of different organisms who all consume different … to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers in …
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Offerings & Capabilities
… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help … Metabolomics. Strong internal collaborations with  Science Programs and  Operations enable the JGI to focus on expanding molecular capabilities and functional …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the study, partly enabled by the JGI’s  Community Science Program , the team generated reference genomes for  B. … (China); Universidad de Zaragoza-Escuela Politécnica Superior de Huesca (Spain); Universidad Central de Venezuela …
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Daniel Udwary
Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the JGI, he … "Natural Prodcast" podcast, a "fireside chat"-style podcast about natural products and the science and scientists of …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy the host … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy … for me and learning how to use the capabilities of the supercomputers here to work with that vast amount of data is …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … we were able to work with on this project to ask questions about structure and function,” Blaby-Haas said.  Looking at … led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE mission, … productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by … At the 2021 JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving …
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Biotech Partners
Biotech Partners provides integrated and high-touch programs that empower underrepresented high school students … instruction and paid internships sponsored by various biotech and healthcare industry partners. Our interns say their experiences allowed …
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Waiting to Respire
… popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic strategies applied by a common … the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy …
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