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Thermal adaptation of soil microbial growth traits in response to chronic warming
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Metagenomics
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Busting the Unbreakable Lignin
… wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than … Centers, the Joint BioEnergy Institute and the Great Lakes Bioenergy Research Center. O’Malley is also affiliated … Research of the U.S. Department of Energy Great Lakes Bioenergy Research Center (GLBRC, …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship … poplar ( Populus trichocarpa ) trees, as well as the soil surrounding their roots (known as the rhizosphere), … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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A More Intuitive Phytozome Interface
… Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ … They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on individual gene …
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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” The study, … a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s Microbiome Data Science …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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