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SIPs with Standards
… (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a … Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few different ways they're working to make …
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Tina Clarke
Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to … State University. Early on Tina knew the importance of understanding human and group behaviors as her role in HR …
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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open to scientists at any career stage, anywhere in the …
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How Microbes Can Protect Plants in Drier Straits
… proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make …
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Fungal Friends or Foes in Plant Roots
… genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their … fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant … and supported by the Office of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science Program (CSP) call of the U.S. Department of … University aims to generate genome sequences from underrepresented green algae groups in a wide range of …
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Creating an Energy Market for Miscanthus
… and a bioenergy plant? Meet Miscanthus , an attractive addition to your garden and a potential fuel for the future. But, to be competitive in the market, both energy policy and Miscanthus will … upgrades. In this episode, hear from scientists working on understanding Miscanthus biology and the economic terrain to …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and are of … methane as an energy source.  Until recently, our understanding of these methanogenic microorganisms was …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of … stable, heavy isotopes, SIP allows researchers to go beyond understanding which microbes are present in a sample, to … how soil microbes cycle nitrogen and carbon, or how freshwater ecosystems process methane and organic matter.  …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is … establishing a professional presence through getting credit for any scientific contribution they make, whether as … a research article. Speakers will highlight opportunities for students through the Department of Energy-funded …
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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some … program , which awards graduate students the opportunity to pursue part of their thesis research at one of the … builds on that. “The purpose of this CSP is to better understand methane cycling in mangrove wetlands in south …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently … Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial sciences …
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