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Exploring Possibilities: 2022 JGI-UC Merced Interns
… valuable because in this time that I’ve been in my PhD program, I’ve been really focused with academia. And so this … but now I think I can lead a team. So maybe I go to industry field, I lead a research team. I think, yeah, … workshop. And I’m excited to take that with me, along with other tools that I can use to, um, perform computational …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome … the OGG. For a long time, C-fern has served as a model for studying ferns and for teaching plant biology. It is typical …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … to bring in a lot more people who want to do it but just otherwise couldn't or wouldn't,” said Rex Malmstrom, leader … This group included Elisha Wood-Charlson, User Engagement Lead for the DOE Systems Biology Knowledgebase …
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A thermostable Cas9 with increased lifetime in human plasma
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate bioenergy … ploidy could be generating these observed patterns. As many other plant species have natural cytotype variation, we also … across hundreds of naturally-occurring genotypes (in this case, a plant’s complete genetic makeup) and 10 common …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … and Molecular Foundry, and the study’s senior author. In other proteins, two histidine residues can be found to … led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant … Schulz, Structure Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and mentor Miguel Romero, …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Tanja Woyke Elected to American Academy of Microbiology
… (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has … honor,” said Axel Visel , JGI Deputy for Science Programs. “It clearly speaks to the enormous impact her … to have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to …
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A Complex Confection Decoded: Sugarcane Reference Genome
… sugarcane conversion technologies for  biofuels and other bioproducts. Finally, understanding how brown rust … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of …
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Waiting to Respire
… of the same clade as Cyanobacteria, applied strategies other than photosynthesis to gain and harness energy. As … the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… is becoming increasingly important for food, fuel and other applications, and breeders aren’t interested in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … he added. Jeremy Schmutz , head of the  JGI Plant Program , drew parallels between these  common gardens and …
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