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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and mentor … gain professional skills, advice skills, wet lab skills and overall connections. Theo Loureaux : I wanted to first …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … on certain functions at the forest floor. For the first time, they compared three different fungal guilds in a range … assembled those RNA transcripts into a metatranscriptome. Overall, they found that despite vast species diversity, …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … There, standing at a safe distance, with proper face covering, was JGI’s Administrative Services Group lead Denise … Director Mary Maxon, among the contributors to the real-time chat during Ray’s All-Hands tribute wrote, “Thanks for …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … time travelers: A finely tuned, time-resolved analysis of viral and microbial communities in the Erpe river” 8:30am … Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial metabolic trajectories during the snowmelt …
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … from all the genes within a cell or tissue at a specific time or under specific conditions – in over a dozen plants. To learn more about the project, …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the overwhelming majority of the ground cover in peatlands. …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … Scalable … Cataloging Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights … along these lines came from UC Berkeley professor and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, … function of this protein. Starting from a gene, they’ve discovered an interesting zinc-mirror heme site that plays a key …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … breakdown, extending into biochemical production.    Over time, as these projects have delivered results, they have …
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