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JGI announces 2024 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows researchers to use them for engineering applications in support of advancing the … and developing high-throughput methods to reveal metabolic pathways that could ultimately enable new or more efficient …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … (BDO). To do so, the yeasts received fine-tuning of gene expression through genetic rewiring with CRISPR-Cas9 … enhanced their ability to redirect the carbon in the cells toward particular pathways. In this case, towards BDO and …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, … from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  …
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient … Having these datasets will assist researchers in moving toward functional genomics studies to learn more about the …
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The genome of the polyextremophilic yeast, Naganishia friedmannii, reveals adaptations involved in stress response pathways, carbohydrate metabolism expansion, and a limited DNA repair repertoire
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JGI Workshops at 33rd Fungal Genetics Conference
… the Edge of Pathogenicity" Workshop Steven Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
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JGI Scientists Pen Genome Watch Articles
… .  The latest article, published January 27, is about engineering plants and their microbiomes for more … for the column, Woyke wrote about the research field’s move toward characterizing the human microbiome  by its genomes … and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program …
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Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes.
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can …
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Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
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