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Complete Genome Sequence of an Evolved Thermotoga maritima Isolate
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Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin
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Draft genome sequence of Nitrobacter vulgaris DSM 10236T
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Draft genome sequence of Gleimia europaea DSM 26657
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … operationalizing new genomic technologies, integrating automated liquid handling and bioinformatics pipelines to … Biology, University of California, San Diego Postdoctoral training in bioinformatics, Lawrence Berkeley National …
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An Integrated Dataset to Understand Ecosystem Interaction
… poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … between the trees, microbes and soil chemistry offers insights into how these ecosystems cycle nutrients like … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a … that produce most secondary metabolites. If you’d like to read more about this, I highly recommend his publication …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … New findings from this line of research combined with past insights will allow the identification of potentially novel …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … between genomes of different species. This can provide insights into how they orchestrate sets of genes to execute …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … Merced, where her group focuses on the interactions between seagrasses, considered marine flowering plants, and their …
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