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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … that will help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  called geNomad identifies and … Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s ecosystems, …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The … authors, while the study’s lead author is Cristina Howard-Varona, a postdoctoral researcher in Sullivan’s lab. … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations … assignable assets program. Q: For a NEON Assignable Assets project, does the data produced become public as well? A:  … many types of sample-associated data and link sample records to other public data sets. Q:  Does NEON have or plan on …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … were incredibly valuable to their careers going forward. Watch this short video (below) to hear more about the … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on … our seven science program — their areas of focus, major initiatives and more.  … formulation and implementation of scientific policy, engaging in interactions with the scientific community at large. …
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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole‐genome sequence assemblies
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The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling
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