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Global diversity and biogeography of deep-sea pelagic prokaryotes
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for … accessibility to the data made available through this multidisciplinary approach allows researchers to conduct a wide variety of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a scientific … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my …
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE … genomic capabilities, large-scale data, and professional expertise to support the global research community in … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … learning, data is passed through algorithms organized into multiple interconnected layers. The architecture of these … aligning sequences with popular, but computationally costly approaches such as BLAST and hidden Markov models (HMMs), …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild … that green millet was introduced into the United States multiple times from Eurasia. The team also identified a gene … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day … and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … a bit on what it means in a more global context. As we approach Earth Day, I thought you might enjoy hearing what …
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Towards a genome-based virus taxonomy
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Tackling soil diversity with the assembly of large, complex metagenomes
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