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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … Microbial Program over the past decade in gene regulatory network projects supported by the CSP, and as part of …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … of five previously uncharacterized prokaryotes, including two bacteria isolated by their lab. KBase was used to …
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Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more about the …
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites
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MGM Workshop at Fisabio Summer School
… Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health … will train participants in state-of-the-art analytical methods in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and biostatistics. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … the DPANN superphylum of Archaea. This pair is abundant in two subsurface ecosystems in very different parts of the …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … vast array of microbial dark matter. The study took roughly two years to complete, with only about 20,000 metagenomes …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … the genomes at HudsonAlpha. Sujan Mamidi and Adam Healey, two of the co-first authors, led the data analyses and …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … team infected the marine  Pseudoalteromonas bacterium with two unrelated viruses: siphovirus PSA-HS2 and podovirus …
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