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Sequencing the fungal tree of life
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A new view of the tree of life
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Tracing the Evolution of Shiitake Mushrooms
… decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. … species. Specifically, many species had very similar plant cell wall degrading enzymes (PCWDEs), including …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed … growth because they had larger genome sizes and their cells were not observed to associate with host cells. In the  Proceedings of the National Academy of …
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Nikos Kyrpides
… global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. … map of urban microbiomes and antimicrobial resistance. Cell . 8674:00585-7. Nayfach S et al. 2021. CheckV assesses … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… (PacBio) metagenomes can be included, which do not count toward the 1Tb cap. PacBio metagenomes are currently …
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JGI@25: Solving the Mystery of the Missing Oil
… at Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab collaborations. The JGI’s single cell genomics expertise led to the identification of a new … what happens at all levels and developing models for cellular properties, communities and ecosystems.” Building …
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JGI & KBase at PAG XXVII
… Plant Genomic Science on current and ongoing developments toward integrative biology. Researchers who are applying …
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Approved Proposals
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … and analysis of their data at the time. Following the publication of their paper in 2011, Dr. Sekimoto from …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE … the 8X variety to be a generalist is a valuable resource towards the effort to generate climate resilient …
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You Can Move, But You Can’t Hide
… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and … chemicals. They can also affect ecosystems by killing other cells. Over time, MGEs can help microbes gain a competitive …
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