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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on … at Lawrence Berkeley National Laboratory, is located in one of those counties. The shelter-in-place order has since been …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what … they adapt by changing what macromolecules are in their biomass, because that affects the quality of the food of these …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on … at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … [DNA Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the … Zerbe of the University of California, Davis. “The work with JGI was one of the first things we actually started …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) Carefully … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … is open year-round, but proposals submitted by September 21, 2020, will be included in the next review. Q&A from the …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) … Science Program (CSP) .  Through this collaboration, in 2017, they published the first genome sequence of a …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … workflow that reduces the time and cost associated with this purification step, and Baumgart continued and … Program proposal call are due in Spring 2022. Byline: Massie S. Ballon       … The U.S. Department of Energy Joint …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, … Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , Managing … Johnston for followup questions.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien …
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