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Genome sequence of Streptomyces auratus DSM 41897
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Genome sequence of Streptomyces sp. DSM 42143
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … of genes across the investigated plants. We did so by analyzing this huge sample set specifically using results …
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal … more multidisciplinary teams. The work also paved the way for a longstanding collaboration between researchers at the … Genome Inside: THE Bioenergy Tree …
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Fishing for Novel Cellulose Degraders
… The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sorting to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team …
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … draws on the strengths of multiple virus-host prediction methods. In building this program,  described in Plos … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced … is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … to be wildly divergent among sample sites. “Many of these sequences are no more similar than random,” Holmes said. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … plants to address these questions.” Multiple collection methods were applied to gather the diversity of switchgrass …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach …
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JGIota: Looking Back at Sequencing for Soybeans
… fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern … metabolites and associated genes are great resources for bioremediation, new agricultural applications or … hoarding had been thought to be the result of multiple whole-genome duplications. The process of genome-doubling, …
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Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi
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