Results

Neha Varghese
… benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data … science and projects through implementation of advanced analysis pipelines and tools as well as development and implementation of microservices in conjunction with the IMG platform. …
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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis▿ †
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
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Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian
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Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis
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Comparative genomics of the genus Desulfitobacterium
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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