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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI Mural
The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing … science depicted. The two-story JGI mural was commissioned for the JGI’s 25th anniversary and done by Berkeley-based …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … the 1000 Fungal Genomes Project, which aims to provide a reference genome for each of the fungal families. … data from newly sequenced genomes, they also built a high-quality phylogenetic tree for  Dothideomycetes . The data …
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … list is available on Google Scholar . … ALE , assembly quality evaluation software based on Bayesian statistics … metagenome binning software … Education … Selected Publications … Software …
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A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
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Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential
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Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs
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Whole genome assembly from 454 sequencing output via modified DNA graph concept
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and …
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Evaluation of inducible promoter–riboswitch constructs for heterologous protein expression in the cyanobacterial species Anabaena sp. PCC 7120
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … are in their biomass, because that affects the quality of the food of these invertebrates that we use as … See you next time. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: …
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