Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
Results
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
Influences of Climate on Phyllosphere Endophytic Bacterial Communities of Wild Poplar
Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
An environmental bacterial taxon with a large and distinct metabolic repertoire
At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions
Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
Complete Genome Sequence of the Metabolically Versatile Plant Growth-Promoting Endophyte Variovorax paradoxus S110
Poisson hurdle model-based method for clustering microbiome features.
