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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted … A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia …
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Introducing New Members of the JGI User Executive Committee
… new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … draws on the strengths of multiple virus-host prediction methods. In building this program,  described in Plos …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for … get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop … crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … plants to address these questions.” Multiple collection methods were applied to gather the diversity of switchgrass …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To fill in their …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of …
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