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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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JGI Mural
The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … around the world. That said, we recognize that workforce in genomics, including JGI, is not representative of the …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and …
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Jinghua Jenny Huang
Jenny is working on the display and visualization of large amount isolate genomic and metagenomic data stored in Oracle databases, …
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide …
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