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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
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Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales
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Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
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User Support Analysis Group
… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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Rex Malmstrom
… the Microscale Applications group to operate a similar single-cell genomics pipeline that provides JGI users access … also carries out custom preparative work for difficult user projects, including those that require fluorescence … Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound …
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Cultivating Symbiotic Antarctic Microbes
… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated … region in the SPEARE proteins appears to be involved in DNA degradation, and these proteins may be directly involved … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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