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Accelerating Metagenomics Discoveries with Deep Learning
… algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… 20 UC Merced students have contributed to the research of 13 JGI scientists through the JGI-UC Merced Genomics …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… — so producing methane or consuming methane, those are already diametrically opposite — but also you do not even …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … 20 UC Merced students have contributed to the research of 13 JGI scientists, and a few of the mentors shared their … really for a significant part of UC Merced’s history and already in its five years has made a really strong impact,” …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that sample, the Salk Institute team was able to …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… protecting these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported …
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How Maize Makes An Antibiotic Cocktail
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JGI@25: Building a Better Bean
… common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an essential … for large producers. The team sequenced and assembled a 473-million basepair genome of the common bean, identifying …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … unknowns’ because they aren’t similar to anything we’ve already defined.  “A huge percentage — around 30–50% of the … into the uncharted territory of understanding the vast landscape of functional diversity, but we have also pushed the …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… the processes happening on and in forest soil also better enriches models of global carbon and nitrogen cycling, both on … fungal enzymes actually outnumbered bacterial enzymes 3-to-1. Additionally, the fungal enzymes the team found … the more bacteria show up. The data underscore what was already suspected: these microbial groups play different …
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Introducing New Members of the JGI User Executive Committee
Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full roster … late 2022 and the election period concluded on Jan. 6, 2023. With the election, the following UEC members stepped down …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals come from investigators …
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