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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a fabricated ecosystem – an EcoFAB. These small plastic growth chambers let researchers around the world compare their …
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Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
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Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
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Science Programs
… The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists … of user projects, develop cutting-edge approaches for and with users, and create computational tools and resources for …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … spans 15 years and involves more than 17 research groups. The team set out to characterize the transcriptome – … updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … more than doubled the number of protein families known up until now, and identified many novel structure … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school … sure we could even complete a full project. Every other group I contacted was happy to offer advice but declined to … own high school biology teacher, who helped connect me with internships and training at the Clorox Company and Lawrence …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in … in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm portal. Dr. Grigoriev … Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the world … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the team focused on Actinobacteria ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found in …
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … IMG because the database already contains metagenome datasets from a variety of environments, as well as tools for … Archaea and Eukarya.   One genome, two metabolic pathways “Up to this point, most phylogenomic trees have relied on …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how … be associated with a plant’s sex. One outcome could be superfemale plants that have increased fruit and seed yield. …
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