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Busting the Unbreakable Lignin
… shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … to be impossible.  And yet, little chemical clues left some researchers wondering if perhaps the accepted narrative …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … happening on and in forest soil also better enriches models of global carbon and nitrogen cycling, both on the …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this … These experiments focused on two species at once: the model legume species  Medicago truncatula and the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … entailing the function of more than a dozen enzymes. But researchers have now revealed that just a handful of enzymes … Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are being …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the …
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Nikos Kyrpides
… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school … that will help shape all of our futures.” Proposing a Research Experience Benskin wanted to give his high school … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Exploring Polymorphisms Created by Transposable Elements
… measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled … high-quality datasets, enabling global insights from modeling, machine learning, and subsequent experiments.  … …
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A tale of two codes
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