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An Integrated Dataset to Understand Ecosystem Interaction
… poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … outlined in  Scientific Data connects molecular features to large ecosystem-level processes for the first time. By … soil chemistry offers insights into how these ecosystems cycle nutrients like nitrogen and carbon, as well as …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … for anaerobic fungi . Eventually, it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many different …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global … cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands couldn’t exist without … plant is under threat due to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of …
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Kjiersten Fagnan
… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked closely with …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To fill in their nutrient gaps, they must latch … there is a vast ecosystem connected to the global carbon cycle. Archaea are key players in this deep biosphere. They …
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When “The Blob” Made It Hotter Under the Water
… marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures … a series of geographic coordinates which go from coastal to open ocean waters. Between 2010 and 2016, Hallam and his … oceans on the microbial populations and the global carbon cycle. Tracking large-scale marine events such as The Blob …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets they look forward to taking back to school.  The interns from this cohort and … was whether I had enough experience to make really good contributions to the project. Also my area of expertise over …
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How Maize Makes An Antibiotic Cocktail
… at least 15 zealexins, they suspect there are even more to find. Zealexins are produced in every corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that … to home in on precise biosynthetic enzymes elicited by fungal infection. They analyzed differences among mutant …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …
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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As reported August 26, … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Boosting Small Molecule Production in Super “Soup”
… engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth and viability constraints. Cell extracts provide … the source strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial … is an allodiploid hybrid of two species, similar to a mule, but that is still able to reproduce asexually … genomic complexity can accelerate the design-build-test cycle for metabolic engineering. The discovery that …
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