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Discovering untapped biochemistry in microorganisms from hidden corners
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Updated Virophage Taxonomy and Distinction from Polinton-like Viruses
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Assembly of Viral Metagenomes from Yellowstone Hot Springs▿ †
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Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria
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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum …
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Workforce Development & Education Outreach
The JGI aims to inspire more students to enter the STEM workforce by fostering an understanding of … with Biotech Partners to host students transitioning from high school to community college. … University of …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … have also launched OakSTeP, which facilitates the further cooperation between professional tree care specialists, …
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An Automated Tool for Assessing Virus Data Quality
… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … their microbial hosts. However, assembling viral genomes from metagenomes is challenging and often results in highly …
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