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Exploring Possibilities: 2022 JGI-UC Merced Interns
… the project. Also my area of expertise over the past couple years is a little bit different from what I did during the …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re … Institute, or JGI.  Two special days occur in April: the 50th celebration of Earth Day on April 22, and DNA Day on …
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Learning to Look
… databases. In this case, the machine “learned” to identify a certain type of bacterial viruses or phages called … 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 inovirus-like sequences compared to the 56 previously known inovirus genomes. “These genomes are so …
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Building Sphagnum Genomic Resources
… matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm establishment … the U.S. Department of Energy under Contract Number DE-AC05-00OR22725. Funding for the peatlands work was also …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI … of the DNA Synthesis Science Program by applying to the year-round Community Science Program Functional Genomics …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in … for 85.2% of the C-fern assembly. While they did identify a couple WGD events, these events could not fully account …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… of Duisburg-Essen (UDE), Germany with the aim of intensifying collaborations in the fields of genomics, structural … space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding … the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander Probst, Stephan …
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Pinning Down a Piece of Photosynthesis
… light, transport molecules and regulate reactions. Identifying these proteins and then figuring out what they are … list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to … set out to tackle some of these genes, expressing and purifying the range of proteins these genes produced, to …
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UC Merced Interns Reflect on Their JGI Summer Projects
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… are often very different than those bred for Texas. Identifying and breeding varieties that have high productivity … version of the genome is assembled into sequences of 5.5 million basepair (bp) in length, while the previous … set up these gardens, we have them to study for a number of years. And that’s a real benefit for the research program.” …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … of the physical memorabilia that she’s held onto over the years. The DOE brought together the people and resources … the DOE Joint Genome Institute in 1997. Over the next seven years, and in collaboration with researchers at the Stanford …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green … scientists want to take a further look into identifying genes related to biotic stresses to better understand … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy …
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