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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students … that they later reported were incredibly valuable to their careers going forward. Watch this short video (below) to … and it’s great to see how far the field has come from the early 2000s. Josue Duque : One of the best parts about …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of … of our long term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as … his time as an undergraduate intern at the JGI helped his career trajectory and ambitions. He reminisced over the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a collaboration involving more than 200 … scientists, researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … model for the grasses. In addition to this fundamental work, he established an efficient switchgrass transformation … distachyon is a small annual grass that is well suited to experimental manipulation in the laboratory because of …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … panel for the JGI’s Director, CIO, and Deputies. The IAC does not perform management functions, nor does it direct …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6T), a diphenol degrader with genes involved in the catechol pathway
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Forming Scientific Connections and Building Community
… experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … In just two months, the students participated in networking workshops, data carpentry hackathons, and also made … and what they’ll take with them as they go forward in their careers.   Listed below are the interns, their mentors, and …
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Biodesign
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … Group : a team that develops data science tools for workflow management and novel automations for DNA design, … assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses …
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and … these are complicated interactions to untangle. Fungi work in cooperation to support a forest, and species vary … soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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An Addiction Crucial to a Fungus’ Reproduction
… the first transcriptomic dataset of sexual reproduction in early fungi and discovered genes that are critical for this … endobacteria also regulate its sexual reproduction. The work sheds light on a poorly understood group of oleaginous … University and scientists at the Joint Genome Institute, a DOE Office of Science User Facility was conducted to …
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