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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … and for the JGI Annual Meeting closes on March 11, 2019. Novel Yellowstone archaeon belongs to Korarchaeota Drs. Luke … reconstructions, the team has two main hypotheses: the novel korarchaeon could switch between methanogenesis and …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their … organelles. Science 376:1453 Schulz et al. 2022. Giant virus biology and diversity in the era of … Nature Biotechnology 35, 676-683. Schulz et al. 2017. Giant viruses with an expanded complement of translation system …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of … I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within … overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David Paez-Espino. …
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Ian Blaby
… at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … Biology . 5: 1. 2020 Nguyen et. al., ManiNetCluster: a novel manifold learning approach to reveal the functional …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and … Tyml and Dr. Frederik Schulz with the New Lineages of Life Group at JGI. And we’ve been working on isolating and …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … how early plants transitioned from water to land. Key gene groups involved in stress tolerance and multicellularity … and compared them with those found in modern plants. They discovered that ancient algae already possessed genetic …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … Parkinson from Purdue University. She’s in the Department of Chemistry and the Department of Medicinal Chemistry and … receptors. And so they were originally, I think, discovered in E. coli, but we can utilize blast searches or …
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Phosphate transporters in marine phytoplankton and their viruses: cross‐domain commonalities in viral‐host gene exchanges
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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
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