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… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now … Theobroma cacao on Phytozome Data Portal …

… massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … figuring out how to filter out noise from the metabolomics data. We’ve done a lot of work learning about how to use … strain to look at.  And then figuring out how to show this data and to do it in a way that makes sense. And I always …

… users with various outputs free of charge, including data such as fully annotated genome assemblies or … that the resulting work will be published. JGI data is subject to a brief embargo period, after which it …

… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …

… Serpula lacrymans on MycoCosm Data portal … Serpula humantioides on MycoCosm Data portal … Datasets … Datasets …

… Metagenomic datasets could help map out microbial diversity hotspots … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study … the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes …

… Morel Mushrooms on MycoCosm Data Portal …

… so everybody, readers of the library, can come to our databases and look for the specific information they are … the genomics, with the bioinformatics and with the bigger data, another area I see a great potential will be machine … fungal strains, that will generate a massive amount of data that current technology has never encountered in the …

… used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, …

… , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that … from environmental samples around the world. Much of the data had been generated from samples provided by more than …

… it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A … Epub 2019 Apr 4. Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell …

… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …