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… by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant to J. …

… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …

… past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting iterative searches …

GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or directly via a web … See our Taxonomy Quick Guide. PM sends PI the sample metadata spreadsheet to fill out (or provides a link to complete …

… call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data … thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …

… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural … genome research and apply experimental and computation tools to solve research problems. In Visel’s group, Olmstead … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that …

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). … Emiley Eloe-Fadrosh is the … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. …

… the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and … and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe … startup, Bio Architecture Lab, Inc. (BAL), where he used systems and synthetic biology to discover novel pathways …

JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from …

…  under PNNL’s Soil Microbiome SFA, which aims for a systems-level understanding of the soil microbiome and its … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place … drought and multi-isotope labeling experiment, and the data will allow them to better understand the impacts of …

… through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …