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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went on to … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for … from their soil samples. This gene expression dataset was particularly important for characterizing fungal …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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Katherine Louie
… nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …
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Annual Genomics of Energy & Environment Meeting
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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JGI-UC Merced Interns Share Their 2021 Experiences
P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional … Transcriptomes of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage …
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JGI at the AGU Fall Meeting
Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … “EMSL’s 1000 Soils Project: core collection strategy and data types available” December 17  6:40am Convention Center … Weisenhorn, KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth …
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Waiting to Respire
Communications , two research teams joined forces and data sets to describe bacterial genomes for related … Carnevali and Schulz sharing co-first authorship. Their data suggests that the shared common ancestor of all five …
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SIPs with Standards
… more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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Year in Review: JGI’s 2018 Progress Report Available Now
… by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and …
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