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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …
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Annual Genomics of Energy & Environment Meeting
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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JGI at the AGU Fall Meeting
Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … “EMSL’s 1000 Soils Project: core collection strategy and data types available” December 17  6:40am Convention Center … Weisenhorn, KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth …
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Waiting to Respire
Communications , two research teams joined forces and data sets to describe bacterial genomes for related … with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and had found they were closely … Carnevali and Schulz sharing co-first authorship. Their data suggests that the shared common ancestor of all five …
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SIPs with Standards
… more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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Year in Review: JGI’s 2018 Progress Report Available Now
… by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and …
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High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
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JGI Launches Latest Strategic Plan
… quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In … include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the launching of a …
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Len Pennacchio
… the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high … Winner” — “Piggyback the Winner.” In the microbial mat, the data suggest viruses are indeed piggybacking their hosts. … terrestrial environment with low mobility. The metagenomic data suggests that viruses don’t diffuse well through the …
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2022 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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JGI-KBase Panel at SACNAS
… to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …
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